STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF57778.1PFAM: major facilitator superfamily MFS_1; KEGG: ehi:EHI_008110 transporter, major facilitator family Pfam: 7TM_GPCR_Srv Sugar_tr MFS_1 DctM Branch_AA_trans Xan_ur_permease BCCT 7TM_GPCR_Srh 7TM_GPCR_Srsx Herpes_glycop DUF975 7TM_GPCR_Str. (422 aa)    
Predicted Functional Partners:
EEF57779.1
PFAM: NUDIX hydrolase; KEGG: sth:STH496 MutT/NUDIX family protein.
       0.773
EEF57777.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: min:Minf_1633 enoyl-[acyl-carrier-protein] reductase (NADH).
       0.538
EEF57780.1
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: gme:Gmet_2576 cytochrome c family protein, putative.
       0.532
EEF57781.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: npu:Npun_R0706 short-chain dehydrogenase/reductase SDR.
       0.410
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.