STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF57999.1PFAM: NHL repeat containing protein; KEGG: ote:Oter_2265 NHL repeat containing protein. (805 aa)    
Predicted Functional Partners:
EEF58000.1
SMART: Nidogen extracellular domain protein; LamG domain protein jellyroll fold domain protein; KEGG: cts:Ctha_1422 fibronectin type III domain protein.
 
     0.629
EEF59505.1
PFAM: putative esterase; SMP-30/Gluconolaconase/LRE domain protein; KEGG: sus:Acid_3430 gluconolactonase.
  
  
  0.507
EEF57641.1
KEGG: fjo:Fjoh_0804 hypothetical protein.
  
     0.451
EEF57998.1
PFAM: protein of unknown function DUF302; KEGG: mlo:mll1327 hypothetical protein.
       0.439
EEF58097.1
PFAM: NHL repeat containing protein; KEGG: sus:Acid_6565 NHL repeat-containing protein.
  
     0.408
EEF57736.1
KEGG: ote:Oter_1490 hypothetical protein.
  
     0.406
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.