STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF58422.1KEGG: rba:RB4127 hypothetical protein. (138 aa)    
Predicted Functional Partners:
EEF58675.1
(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase; KEGG: ppd:Ppro_3267 malto-oligosyltrehalose synthase.
    
 0.741
EEF58679.1
KEGG: ote:Oter_1106 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
 
  0.702
EEF60511.1
KEGG: rrs:RoseRS_3113 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
    
   0.678
EEF61817.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.678
EEF62430.1
PFAM: aminotransferase class V; KEGG: min:Minf_0969 selenocysteine lyase/cysteine desulfurase.
    
   0.678
EEF62941.1
PFAM: aminotransferase class V; KEGG: mxa:MXAN_5758 isopenicillin N epimerase.
    
   0.678
EEF62669.1
KEGG: sus:Acid_6964 signal peptide and transmembrane prediction.
  
     0.538
EEF59396.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7764 oxidoreductase domain-containing protein.
  
     0.455
EEF58423.1
Hypothetical protein.
       0.432
EEF62868.1
PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein.
  
     0.423
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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