STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF59138.1Transcriptional regulator, XRE family; PFAM: beta-lactamase domain protein; KEGG: min:Minf_1629 Zn-dependent hydrolase, glyoxylase family. (274 aa)    
Predicted Functional Partners:
EEF57497.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ote:Oter_2142 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.814
EEF62919.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ote:Oter_1979 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
  0.778
EEF57452.1
PFAM: Rhodanese domain protein; KEGG: gme:Gmet_3018 rhodanese-like.
  
 0.762
EEF59943.1
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: rxy:Rxyl_0743 UBA/ThiF-type NAD/FAD binding fold.
  
 0.762
EEF61958.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Luciferase-like monooxygenase; KEGG: mxa:MXAN_4532 non-ribosomal peptide synthase.
   
 0.708
EEF59137.1
PFAM: glycerate kinase; KEGG: sth:STH2490 glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
     0.665
EEF60006.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: npu:Npun_F2183 amino acid adenylation domain-containing protein.
   
 0.531
EEF60978.1
Amino acid adenylation domain protein; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mar:MAE_60000 McnE protein.
   
 0.531
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
 
 0.519
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.504
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.