STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF59725.1PFAM: ABC-2 type transporter; KEGG: rba:RB6045 hypothetical protein. (536 aa)    
Predicted Functional Partners:
EEF58530.1
KEGG: swo:Swol_1724 hypothetical protein.
  
     0.725
EEF57067.1
KEGG: rba:RB3293 hypothetical protein.
  
     0.658
EEF57278.1
PFAM: von Willebrand factor type A; KEGG: swo:Swol_1716 conserved putative chloride channel.
  
     0.568
EEF57767.1
PFAM: Carbohydrate-selective porin OprB; KEGG: rba:RB9508 hypothetical protein; Belongs to the OprB family.
  
     0.558
EEF60663.1
KEGG: ana:alr2986 unknown protein.
  
     0.552
EEF59313.1
Hypothetical protein; KEGG: rba:RB11015 signal peptide.
  
     0.530
EEF62868.1
PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein.
  
     0.517
EEF59314.1
Hypothetical protein; KEGG: rba:RB11015 signal peptide.
  
     0.510
EEF57902.1
TIGRFAM: heme-binding protein; KEGG: rba:RB4167 hypothetical protein.
  
     0.503
EEF57281.1
KEGG: cau:Caur_3409 hypothetical protein.
  
     0.497
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.