STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF59901.1PFAM: beta-lactamase domain protein; KEGG: mth:MTH1831 hypothetical protein. (260 aa)    
Predicted Functional Partners:
EEF59918.1
PFAM: DNA/RNA non-specific endonuclease; Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype; KEGG: hau:Haur_1138 DNA/RNA non-specific endonuclease.
   
   0.947
EEF61250.1
PFAM: Aldose 1-epimerase; KEGG: sus:Acid_7259 aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
    
   0.779
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.572
EEF57229.1
KEGG: min:Minf_0080 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S).
  
 
 
 0.410
EEF60439.1
TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ote:Oter_0098 ATP--cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
    
  0.403
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.