STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60120.1PFAM: carbohydrate kinase FGGY; KEGG: rba:RB8788 ribulokinase; Belongs to the FGGY kinase family. (539 aa)    
Predicted Functional Partners:
EEF58684.1
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: ote:Oter_1303 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.837
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ote:Oter_3559 xylulokinase.
 
 
0.768
EEF61692.1
Glutamate-1-semialdehyde 2,1-aminomutase; PFAM: 3-dehydroquinate synthase; KEGG: pac:PPA2320 L-arabinose utilization protein, glycerol dehydrogenase.
 
  
 0.750
EEF62335.1
PFAM: PfkB domain protein; KEGG: ote:Oter_4259 PfkB domain protein.
     
 0.717
EEF58768.1
KEGG: ote:Oter_4198 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
    
  0.714
EEF61006.1
PFAM: ribulose-phosphate 3-epimerase; KEGG: bme:BMEI1116 ribulose-phosphate 3-epimerase.
     
 0.701
EEF61007.1
PFAM: ribulose-phosphate 3-epimerase; KEGG: oih:OB1511 ribulose-phosphate 3-epimerase.
     
 0.701
EEF62319.1
PFAM: PfkB domain protein; KEGG: ote:Oter_4086 PfkB domain protein.
  
  
 0.580
EEF60119.1
KEGG: rba:RB11736 hypothetical protein.
       0.462
EEF58600.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_1007 hypothetical protein.
  
  
  0.448
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.