STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60189.1PFAM: protein of unknown function DUF1328; KEGG: pmy:Pmen_0080 protein of unknown function DUF1328. (53 aa)    
Predicted Functional Partners:
EEF60723.1
PFAM: CsbD family protein; KEGG: gur:Gura_2405 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.800
EEF60188.1
KEGG: tcx:Tcr_1934 hypothetical protein.
       0.773
EEF60190.1
Hypothetical protein.
       0.773
EEF60763.1
PFAM: protein of unknown function DUF1328; KEGG: ote:Oter_0112 protein of unknown function DUF1328.
  
     0.749
EEF61198.1
KEGG: plt:Plut_0162 hypothetical protein.
   
    0.536
EEF60191.1
Ferredoxin-fold anticodon-binding; KEGG: cac:CAC2356 phenylalanyl-tRNA synthetase subunit beta.
       0.446
pheT
KEGG: pca:Pcar_1423 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; B3/4 domain protein; tRNA synthetase B5.
       0.446
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: ote:Oter_2356 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.435
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.