STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60407.1TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: min:Minf_0751 outer membrane protein. (829 aa)    
Predicted Functional Partners:
EEF62839.1
KEGG: min:Minf_1577 TPR repeats containing protein.
 
 
 0.964
EEF60406.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: min:Minf_0749 outer membrane protein.
 
  
 0.958
EEF60164.1
SMART: Tetratricopeptide domain protein; KEGG: rba:RB12056 hypothetical protein.
 
 
 0.953
EEF57380.1
Membrane-associated zinc metalloprotease; KEGG: min:Minf_1970 predicted membrane-associated Zn-dependent protease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
 
  
 0.865
pal
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; Belongs to the Pal lipoprotein family.
  
 
 
 0.797
EEF60408.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.788
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
    0.767
EEF59646.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_3325 MotA/TolQ/ExbB proton channel.
  
     0.753
EEF58441.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: min:Minf_2447 biopolymer transport protein.
  
     0.752
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.745
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.