STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60550.1PFAM: protein of unknown function DUF214; KEGG: rba:RB7074 ABC transporter permease. (1109 aa)    
Predicted Functional Partners:
EEF60551.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2358 ABC transporter-related protein.
  
  0.896
EEF59551.1
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: sfu:Sfum_2810 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 0.819
EEF61276.1
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dol:Dole_0380 outer membrane lipoprotein carrier protein LolA.
   
 
 0.787
EEF58061.1
PFAM: Pyrrolo-quinoline quinone; KEGG: rba:RB7541 serine/threonine protein kinase related protein.
  
     0.775
EEF58062.1
SMART: Pyrrolo-quinoline quinone; KEGG: rba:RB11660 serine/threonine protein kinase related protein.
  
     0.775
EEF58497.1
PFAM: Pyrrolo-quinoline quinone; KEGG: rba:RB983 serine/threonine protein kinase.
  
     0.775
EEF58256.1
FOG: WD40-like repeat-like protein; KEGG: rba:RB5272 hypothetical protein.
  
     0.775
EEF59060.1
FOG: WD40-like repeat-like protein; KEGG: rba:RB2837 hypothetical protein.
  
     0.775
EEF59087.1
SMART: Pyrrolo-quinoline quinone; KEGG: rba:RB12562 alcohol dehydrogenase [acceptor].
  
     0.775
EEF59632.1
PFAM: Pyrrolo-quinoline quinone; KEGG: rba:RB7541 serine/threonine protein kinase related protein.
  
     0.775
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.