STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60775.1KEGG: fre:Franean1_1642 hypothetical protein. (250 aa)    
Predicted Functional Partners:
EEF60776.1
PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa19230 hypothetical protein.
 
     0.946
EEF62678.1
PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro00244 hypothetical protein.
 
     0.775
EEF60283.1
TIGRFAM: transcriptional regulator, PadR-family; PFAM: transcriptional regulator PadR family protein; KEGG: sus:Acid_6193 PadR family transcriptional regulator.
 
     0.721
EEF60777.1
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ote:Oter_0080 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.568
EEF63059.1
PFAM: Ig domain protein group 1 domain protein; SMART: Immunoglobulin subtype; KEGG: hau:Haur_1518 coagulation factor 5/8 type domain-containing protein.
  
     0.445
EEF60774.1
KEGG: rca:Rcas_3538 hypothetical protein.
       0.439
EEF57400.1
PFAM: LGFP repeat protein; KEGG: kra:Krad_1965 LGFP repeat-containing protein.
  
     0.438
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.