STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF61119.1PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: npu:Npun_R2278 protein of unknown function DUF893, YccS/YhfK. (737 aa)    
Predicted Functional Partners:
EEF61815.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein.
   
    0.785
EEF61819.1
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ote:Oter_0603 SUF system FeS assembly protein, NifU family.
   
    0.785
EEF62255.1
PFAM: phospholipid/glycerol acyltransferase; KEGG: hau:Haur_0769 phospholipid/glycerol acyltransferase.
  
     0.649
EEF60191.1
Ferredoxin-fold anticodon-binding; KEGG: cac:CAC2356 phenylalanyl-tRNA synthetase subunit beta.
    
   0.632
pheT
KEGG: pca:Pcar_1423 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; B3/4 domain protein; tRNA synthetase B5.
    
   0.632
EEF62254.1
KEGG: mxa:MXAN_5961 PAP2 family protein.
  
     0.631
EEF61275.1
PFAM: lipid A biosynthesis acyltransferase; KEGG: gsu:GSU0456 hypothetical protein.
  
     0.542
EEF60843.1
KEGG: gur:Gura_0539 hypothetical protein.
    
   0.530
EEF63267.1
KEGG: cts:Ctha_0639 hypothetical protein.
  
     0.504
EEF62415.1
PFAM: Radical SAM domain protein; KEGG: aba:Acid345_2134 Fe-S protein, radical SAM family.
  
     0.494
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.