STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF61621.1PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1549 outer membrane efflux protein. (442 aa)    
Predicted Functional Partners:
EEF61620.1
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gur:Gura_0088 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.963
EEF61619.1
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: min:Minf_0095 putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
  0.931
EEF59551.1
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: sfu:Sfum_2810 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
   
 
 0.787
EEF62624.1
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reh:H16_B0582 cation/multidrug efflux system, mebrane-fusion component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.731
EEF63267.1
KEGG: cts:Ctha_0639 hypothetical protein.
  
     0.558
EEF60541.1
PFAM: secretion protein HlyD family protein; KEGG: glo:Glov_3107 secretion protein HlyD family protein.
  
  0.538
EEF62625.1
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mca:MCA0978 CzcA family heavy metal efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
  0.530
EEF63425.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ote:Oter_1637 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.504
EEF61622.1
Hypothetical protein.
       0.503
EEF63264.1
TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: cts:Ctha_0978 hypothetical protein.
  
     0.499
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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