STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF61438.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_2364 xylose isomerase domain protein TIM barrel. (298 aa)    
Predicted Functional Partners:
EEF60732.1
PFAM: protein of unknown function DUF1080; KEGG: ote:Oter_3044 protein of unknown function DUF1080.
  
     0.760
EEF59722.1
PFAM: protein of unknown function DUF1080; KEGG: ote:Oter_3044 protein of unknown function DUF1080.
  
     0.758
EEF57219.1
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sus:Acid_5055 nucleoside:H+ symporter.
 
     0.754
EEF60809.1
PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase.
 
     0.749
EEF60810.1
KEGG: swd:Swoo_0368 hypothetical protein.
  
     0.744
EEF62473.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_3285 xylose isomerase domain protein TIM barrel.
  
  
  0.742
EEF61906.1
PFAM: nucleoside:H symporter; KEGG: pat:Patl_2688 nucleoside:H+ symporter.
 
     0.740
EEF60883.1
PFAM: protein of unknown function DUF1080; KEGG: ote:Oter_3566 protein of unknown function DUF1080.
  
  
  0.703
EEF62805.1
PFAM: protein of unknown function DUF1080; KEGG: rba:RB5644 secreted glycosyl hydrolase.
  
     0.701
EEF61556.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain-containing protein.
  
    0.622
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.