STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF61721.1KEGG: rba:RB13131 cysteine proteinase. (448 aa)    
Predicted Functional Partners:
EEF61720.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: protein of unknown function DUF1080; KEGG: rba:RB3919 signal peptide.
     0.984
EEF62288.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: HEAT domain containing protein; KEGG: rba:RB3919 signal peptide.
 
     0.889
EEF63178.1
TIGRFAM: heme-binding protein; KEGG: rba:RB4621 signal peptide.
  
  
  0.765
EEF60881.1
KEGG: rba:RB9713 large, multifunctional secreted protein.
  
     0.745
EEF62808.1
TIGRFAM: heme-binding protein; KEGG: rba:RB3322 cytochrome c.
 
     0.743
EEF58789.1
TIGRFAM: heme-binding protein; KEGG: rba:RB728 putative cytochrome c.
  
     0.739
EEF58089.1
TIGRFAM: membrane-bound dehydrogenase domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: rba:RB4621 signal peptide.
  
  
  0.735
EEF59051.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rba:RB3322 cytochrome c.
 
     0.735
EEF61121.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12035 hypothetical protein.
  
     0.725
EEF58462.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 cytochrome c.
 
     0.723
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.