STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62279.1N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: ote:Oter_4550 N-acetylmuramoyl-L-alanine amidase. (404 aa)    
Predicted Functional Partners:
EEF61276.1
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dol:Dole_0380 outer membrane lipoprotein carrier protein LolA.
    
   0.857
EEF62278.1
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rca:Rcas_3656 NAD-dependent epimerase/dehydratase.
       0.773
EEF61470.1
PFAM: Rhomboid family protein; KEGG: spc:Sputcn32_0909 rhomboid family protein.
   
   0.653
EEF58757.1
PFAM: Rhomboid family protein; KEGG: pca:Pcar_2453 uncharacterized membrane protein.
    
   0.625
EEF61160.1
PFAM: Rhomboid family protein; KEGG: spt:SPA3382 predicted intramembrane serine protease.
    
   0.625
EEF61510.1
PFAM: Rhomboid family protein; KEGG: ote:Oter_3495 rhomboid family protein.
    
   0.625
EEF61937.1
PFAM: Rhomboid family protein; KEGG: chu:CHU_0287 hypothetical protein.
    
   0.625
EEF62280.1
Hypothetical protein.
       0.503
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.501
EEF61907.1
KEGG: gka:GK3175 hypothetical protein.
  
  
  0.478
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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