STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62351.1KEGG: rba:RB13312 hypothetical protein. (282 aa)    
Predicted Functional Partners:
EEF60748.1
Hypothetical protein; KEGG: rba:RB8214 putative membrane bound transporter.
  
     0.697
EEF62352.1
PFAM: Laminin G sub domain 2; SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: mag:amb3422 hypothetical protein.
 
     0.687
EEF59220.1
KEGG: ote:Oter_3736 hypothetical protein.
  
     0.579
EEF62350.1
PFAM: dihydrodipicolinate synthetase; KEGG: bfs:BF3713 putative N-acetylneuraminate lyase (sialic acid lyase); Belongs to the DapA family.
       0.523
EEF61188.1
Hypothetical protein; KEGG: ote:Oter_1762 type IV pilus biogenesis protein.
  
     0.503
EEF57155.1
KEGG: min:Minf_1251 hypothetical protein.
  
     0.492
EEF58626.1
KEGG: ote:Oter_2367 hypothetical protein.
  
     0.492
EEF60394.1
KEGG: ote:Oter_0106 hypothetical protein.
  
     0.489
EEF59165.1
SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_01229030 SLEI family protein Pfam: TPR_1 TPR_2 FAT TPR_3 SHNi-TPR Sel1 VAR1 DUF627 Phage_Treg GBP_C MIT DUF1978 TipAS Mad3_BUB1_I PROSITE: TPR TPR_REGION.
  
     0.478
EEF61186.1
Hypothetical protein; KEGG: cya:CYA_0649 putative pilus biogenesis protein.
  
     0.477
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.