STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62371.1KEGG: lch:Lcho_1386 hypothetical protein. (398 aa)    
Predicted Functional Partners:
EEF62372.1
KEGG: lch:Lcho_1384 hypothetical protein.
       0.773
EEF62373.1
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0844 cell wall biosynthesis glycosyltransferase-like protein.
       0.709
EEF62370.1
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_6548 glycosyl transferase group 1.
       0.661
EEF62369.1
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: hau:Haur_3584 asparagine synthase (glutamine-hydrolyzing).
       0.656
EEF62368.1
PFAM: glycosyl transferase family 2; KEGG: ade:Adeh_2775 glycosyl transferase, family 2.
       0.561
EEF62367.1
PFAM: polysaccharide deacetylase; KEGG: chy:CHY_0274 polysaccharide deacetylase family protein.
       0.499
EEF62365.1
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ppd:Ppro_2880 lipopolysaccharide biosynthesis.
     
 0.439
EEF62366.1
PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_0969 glycosyl transferase, group 1.
       0.428
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.