STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62395.1KEGG: gme:Gmet_1992 two component, sigma54 specific, transcriptional regulator, Fis family; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (453 aa)    
Predicted Functional Partners:
EEF61789.1
KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 0.950
EEF62394.1
Multi-sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: gme:Gmet_1993 histidine kinase.
 
 
  0.922
EEF60018.1
PFAM: response regulator receiver; KEGG: npu:Npun_F2686 GAF sensor hybrid histidine kinase.
  
 0.868
EEF59484.1
PFAM: GAF domain protein; KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
 0.850
EEF58064.1
KEGG: ava:Ava_3771 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 0.829
EEF60905.1
PFAM: response regulator receiver; KEGG: npu:Npun_R2901 multi-sensor hybrid histidine kinase.
  
 0.824
EEF57583.1
Putative PAS/PAC sensor protein; KEGG: npu:Npun_F2908 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
 0.811
EEF59684.1
PFAM: response regulator receiver; KEGG: dvl:Dvul_2403 two component, sigma54 specific, Fis family transcriptional regulator.
  
 0.811
EEF60017.1
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sus:Acid_2046 GAF sensor hybrid histidine kinase.
  
 0.805
EEF61095.1
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ote:Oter_2650 RNA polymerase, sigma 54 subunit, RpoN.
  
  
  0.805
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.