STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62859.1Hypothetical protein; KEGG: ote:Oter_2994 peptidase C1A papain. (248 aa)    
Predicted Functional Partners:
EEF62860.1
KEGG: gvi:gll3617 unknown protein.
       0.678
EEF62861.1
Hypothetical protein.
       0.669
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.529
EEF62862.1
KEGG: gur:Gura_1180 virulence protein-like protein.
       0.460
EEF59438.1
KEGG: gur:Gura_0072 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
   0.449
EEF60443.1
KEGG: bld:BLi03062 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
   0.449
EEF62858.1
Hypothetical protein.
       0.448
EEF59737.1
PFAM: Immunoglobulin I-set domain protein; SMART: Immunoglobulin C2 type; Immunoglobulin subtype; KEGG: gur:Gura_0373 alpha-tubulin suppressor and related RCC1domain-containing protein.
    
   0.418
EEF59992.1
PFAM: Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype; KEGG: mxa:MXAN_0889 RCC1 repeat domain protein.
    
   0.418
EEF61684.1
PFAM: Immunoglobulin I-set domain protein; Immunoglobulin domain protein; SMART: Immunoglobulin C2 type; Immunoglobulin subtype; KEGG: mxa:MXAN_0889 RCC1 repeat domain protein.
    
   0.418
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.