STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62868.1PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein. (264 aa)    
Predicted Functional Partners:
EEF62808.1
TIGRFAM: heme-binding protein; KEGG: rba:RB3322 cytochrome c.
  
  
  0.805
EEF58462.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 cytochrome c.
  
     0.770
EEF62809.1
TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 cytochrome c.
  
     0.770
EEF59040.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rba:RB1988 glucose dehydrogenase-B [pyrroloquinoline-quinone] [precursor].
  
     0.768
EEF61194.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
  
     0.766
EEF59051.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rba:RB3322 cytochrome c.
  
     0.765
EEF58230.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: rba:RB5806 hypothetical protein.
  
     0.756
EEF59396.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7764 oxidoreductase domain-containing protein.
  
     0.756
EEF62288.1
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; PFAM: HEAT domain containing protein; KEGG: rba:RB3919 signal peptide.
  
     0.756
EEF58668.1
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.746
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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