STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62945.1PFAM: secretion protein HlyD family protein; KEGG: npu:Npun_F3670 secretion protein HlyD family protein. (389 aa)    
Predicted Functional Partners:
EEF62946.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: npu:Npun_R5592 EmrB/QacA family drug resistance transporter.
   0.951
EEF61562.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: npu:Npun_F3672 EmrB/QacA family drug resistance transporter.
 
   0.813
EEF57579.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: min:Minf_0313 permease of the major facilitator superfamily.
   0.811
EEF62927.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_0667 EmrB/QacA family drug resistance transporter.
 
     0.608
EEF62947.1
PFAM: regulatory protein TetR; KEGG: ote:Oter_2223 transcriptional regulator, TetR family.
 
     0.599
EEF61574.1
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_1698 outer membrane efflux protein.
  
  0.558
EEF62793.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sus:Acid_3407 RND efflux system outer membrane lipoprotein.
  
  0.556
EEF59551.1
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: sfu:Sfum_2810 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.554
EEF58917.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sus:Acid_3407 RND efflux system outer membrane lipoprotein.
  
  0.553
EEF62717.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_3925 RND efflux system, outer membrane lipoprotein, NodT.
  
  0.549
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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