STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF63104.1KEGG: reh:PHG069 hypothetical protein. (449 aa)    
Predicted Functional Partners:
EEF63108.1
Hydrogen:quinone oxidoreductase; PFAM: nickel-dependent hydrogenase large subunit; KEGG: reh:PHG065 putative [NiFe] hydrogenase large subunit.
 
 
 0.952
EEF63102.1
KEGG: sus:Acid_6558 hypothetical protein.
 
     0.951
EEF63103.1
KEGG: reh:PHG068 hypothetical protein.
 
     0.951
EEF63105.1
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sus:Acid_6561 hydrogenase maturation protease.
 
     0.950
EEF63107.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: sus:Acid_6555 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.923
EEF63111.1
PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: mav:MAV_2683 hypothetical protein.
 
     0.851
EEF63106.1
Hypothetical protein.
       0.727
EEF61962.1
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3707 hypothetical protein.
   
 
 0.642
EEF62599.1
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsh:Rsph17029_3442 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.642
EEF60538.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ote:Oter_2581 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 
 0.625
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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