STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF63409.1PFAM: protein of unknown function DUF1597; KEGG: min:Minf_0089 hypothetical protein. (402 aa)    
Predicted Functional Partners:
EEF63407.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tcx:Tcr_1802 hypothetical protein.
       0.737
EEF63408.1
Hypothetical protein.
       0.737
EEF63406.1
PFAM: protein of unknown function DUF323; KEGG: npu:Npun_R3273 hypothetical protein.
       0.726
EEF58193.1
KEGG: mrd:Mrad2831_3341 hypothetical protein.
  
     0.627
EEF60531.1
KEGG: min:Minf_1225 predicted exporter of the RND superfamily.
  
     0.545
EEF61195.1
KEGG: min:Minf_1225 predicted exporter of the RND superfamily.
  
     0.536
EEF63402.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_0080 binding-protein dependent transport system inner membrane protein.
       0.510
EEF63403.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_1857 ABC transporter related.
       0.510
EEF63404.1
PFAM: polysaccharide deacetylase; KEGG: msm:MSMEG_4373 polysaccharide deacetylase, putative.
       0.510
EEF63405.1
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein.
       0.510
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.