STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF60580.1Hypothetical protein. (36 aa)    
Predicted Functional Partners:
EEF60581.1
TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bmu:Bmul_4115 outer membrane autotransporter barrel domain protein.
       0.773
EEF60582.1
Hypothetical protein; KEGG: rba:RB11016 signal peptide.
       0.768
EEF60583.1
KEGG: rba:RB9651 sialic acid-specific 9-O-acetylesterase; TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: Fibronectin type III domain protein; protein of unknown function DUF303 acetylesterase putative.
       0.756
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.