STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF62202.1Hypothetical protein; KEGG: syg:sync_1467 endoglucanase. (754 aa)    
Predicted Functional Partners:
cobB
PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
       0.558
EEF59805.1
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase family 26; KEGG: bld:BLi00735 YdhT; Belongs to the glycosyl hydrolase 26 family.
 
  
  0.487
EEF61624.1
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: ana:all0364 similar to prohormone convertase.
   
 
 0.478
EEF60354.1
KEGG: scl:sce2606 hypothetical protein.
  
     0.436
EEF58989.1
KEGG: ote:Oter_2674 hypothetical protein.
  
     0.433
EEF59520.1
PFAM: PA14 domain protein; KEGG: aba:Acid345_1484 hypothetical protein.
  
    0.432
EEF63146.1
PFAM: Fibronectin type III domain protein; KEGG: gvi:glr0592 hypothetical protein.
  
 
  0.427
EEF58610.1
PFAM: PA14 domain protein; KEGG: aba:Acid345_1484 hypothetical protein.
  
    0.424
EEF58089.1
TIGRFAM: membrane-bound dehydrogenase domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: rba:RB4621 signal peptide.
  
 
  0.418
EEF63177.1
TIGRFAM: heme-binding protein; PFAM: coagulation factor 5/8 type domain protein; KEGG: rba:RB5811 hypothetical protein.
  
 
  0.418
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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