STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP49622.1Transcription-repair coupling factor. (486 aa)    
Predicted Functional Partners:
AKP49625.1
Alkaline ceramidase domain protein.
 
     0.859
AKP49624.1
Hypothetical protein.
 
    0.838
AKP52808.1
Alkaline ceramidase domain protein.
  
     0.773
AKP49595.1
Putative secreted protein.
  
     0.771
AKP50591.1
Alkaline ceramidase domain protein.
  
     0.771
AKP53710.1
Hypothetical protein.
  
     0.769
AKP52624.1
Acetyl xylan esterase.
  
     0.767
AKP52733.1
Hypothetical protein.
  
     0.764
AKP53077.1
Neutral/alkaline non-lysosomal ceramidase.
  
     0.761
AKP53078.1
Neutral/alkaline non-lysosomal ceramidase.
  
     0.756
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.