STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP50868.1Regulatory sensor-transducer, BlaR1/MecR1 family. (414 aa)    
Predicted Functional Partners:
AKP50867.1
Transcriptional regulator, MecI family.
 
     0.916
AKP53619.1
TonB-dependent receptor plug.
 
 
 0.723
AKP53087.1
Putative transcriptional regulator.
 
     0.690
AKP51522.1
TonB-dependent receptor plug.
  
 
 0.687
AKP52577.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.686
AKP54051.1
Hypothetical protein.
 
   0.681
AKP52576.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.676
AKP53098.1
TonB-dependent receptor.
  
 
 0.666
AKP54245.1
Transcriptional regulator, MecI family.
 
     0.646
AKP54049.1
TonB-dependent receptor.
 
   0.644
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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