Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKP51423.1Hypothetical protein. (561 aa)    
Predicted Functional Partners:
AKP51422.1
TonB-dependent receptor plug.
 
     0.932
AKP51522.1
TonB-dependent receptor plug.
 
     0.774
AKP51432.1
Hypothetical protein.
  
     0.768
AKP51433.1
Hypothetical protein.
  
     0.768
AKP49785.1
TonB-dependent receptor plug.
 
     0.766
AKP54174.1
TonB-dependent receptor plug.
  
     0.761
AKP53241.1
Hypothetical protein.
  
     0.747
AKP51424.1
Hypothetical protein.
  
     0.739
AKP51532.1
Two component regulator propeller domain protein.
  
     0.738
AKP54194.1
Putative nutrient binding outer membrane protein.
  
 
   0.725
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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