Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKP51426.1Putative sugar permease. (415 aa)    
Predicted Functional Partners:
AKP51425.1
Xylose operon regulatory protein.
 
   
 0.829
AKP51427.1
ROK family protein.
 
  
 0.737
AKP51424.1
Hypothetical protein.
 
     0.575
AKP50725.1
Hypothetical protein.
 
     0.470
AKP49683.1
Hypothetical protein.
 
     0.465
AKP51348.1
Hypothetical protein.
  
     0.462
AKP53826.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.447
AKP50728.1
RagB/SusD domain-containing protein.
  
     0.445
AKP53887.1
Putative nutrient binding outer membrane protein.
  
     0.429
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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