Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKP51443.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
AKP51441.1
Hypothetical protein.
 
     0.805
AKP51442.1
Preprotein translocase, YajC subunit.
       0.802
AKP51444.1
Hypothetical protein.
       0.788
AKP51445.1
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.788
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.779
AKP51897.1
Hypothetical protein.
  
     0.551
AKP51738.1
Putative lipoprotein.
  
     0.541
AKP51446.1
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.538
AKP51924.1
Hypothetical protein.
  
     0.523
AKP51869.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
     0.470
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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