Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKP52237.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
AKP52238.1
Hypothetical protein.
 
   
 0.950
AKP52239.1
PF04255 family protein.
  
     0.772
AKP51216.1
Transcriptional regulator.
  
     0.518
AKP49601.1
Hypothetical protein.
  
     0.476
AKP53209.1
Hypothetical protein.
  
     0.447
AKP49681.1
Hypothetical protein.
  
     0.429
AKP49682.1
Hypothetical protein.
  
     0.419
AKP52236.1
Deoxyribodipyrimidine photolyase-related protein.
       0.415
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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