STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP52542.1Hypothetical protein. (677 aa)    
Predicted Functional Partners:
AKP54204.1
Lipopolysaccharide biosynthesis protein.
 
     0.744
AKP54205.1
O-antigen polymerase.
  
     0.744
AKP54203.1
Outer membrane efflux protein.
  
    0.693
AKP54199.1
Putative transmembrane glycosyltransferase.
  
     0.619
AKP54208.1
Lipopolysaccharide biosynthesis protein WzxC.
  
     0.603
AKP50115.1
Hypothetical protein.
  
     0.581
AKP54210.1
UDP-galactopyranose mutase.
  
     0.534
AKP51188.1
Hypothetical protein.
  
 
   0.510
AKP54207.1
Glycosyltransferase.
  
     0.503
AKP54209.1
Glycosyl transferase, family 2.
  
     0.486
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.