STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP52831.1Outer membrane protein OmpA. (658 aa)    
Predicted Functional Partners:
AKP52832.1
Hypothetical protein.
       0.783
AKP52830.1
NAD-dependent protein deacetylase of SIR2 family.
       0.704
AKP52054.1
Small GTP-binding protein.
 
     0.674
AKP52829.1
Hypothetical protein.
       0.666
AKP52197.1
PKD domain containing protein.
  
 
   0.663
AKP49998.1
Hypothetical protein.
  
 
 0.646
AKP50635.1
Hypothetical protein.
 
    0.555
AKP52978.1
Hypothetical protein.
  
    0.551
AKP52373.1
Hypothetical protein.
  
     0.547
AKP52180.1
Outer membrane lipoprotein omp16.
 
 
 0.543
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.