STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP53926.1Hypothetical protein. (556 aa)    
Predicted Functional Partners:
AKP53929.1
Ribosomal RNA adenine dimethylase domain protein.
 
     0.514
AKP53927.1
Hypothetical protein.
       0.496
AKP53928.1
Radical SAM domain protein.
       0.496
AKP51739.1
Hypothetical protein.
  
     0.494
AKP52054.1
Small GTP-binding protein.
 
 
 0.485
AKP52029.1
Tetratricopeptide repeat domain protein.
  
 
   0.470
AKP52822.1
Hypothetical protein.
  
     0.436
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.418
AKP50503.1
Tetratricopeptide tpr 1 repeat-containing protein.
  
 
   0.416
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.401
Your Current Organism:
Cyclobacterium amurskyense
NCBI taxonomy Id: 320787
Other names: C. amurskyense, Cyclobacterium amurskyense Nedashkovskaya et al. 2005 emend. Hahnke et al. 2016, KCTC 12363, KMM 6143, LMG 23026, LMG:23026
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.