STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AC578_6513RBR-type E3 ubiquitin transferase. (318 aa)    
Predicted Functional Partners:
AC578_7966
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.728
AC578_10643
Ubiquitin-like domain-containing protein.
    
  0.489
AC578_8631
RRN7-type domain-containing protein.
    
  0.489
AC578_6214
Uncharacterized protein.
   
  0.470
AC578_8841
Ubiquitin-like domain-containing protein.
   
  0.470
AC578_1151
Uncharacterized protein.
   
  0.470
AC578_709
Uncharacterized protein.
   
  0.470
AC578_1859
IBR domain-containing protein.
    
 
0.467
AC578_9364
RBR-type E3 ubiquitin transferase.
    
  0.467
AC578_4608
Uncharacterized protein.
    
  0.467
Your Current Organism:
Pseudocercospora eumusae
NCBI taxonomy Id: 321146
Other names: Mycosphaerella eumusae, Mycosphaerella eumusae Crous & Mour., 2002, P. eumusae, PREM 57315, Pseudocercospora eumusae Crous & Mour., 2002, Septoria eumusae, Septoria eumusae Carlier, M.-F. Zapater, Lapeyre, D.R. Jones & Mour., 2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.