STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsD_1Type I secretion system ATP-binding protein PrsD. (692 aa)    
Predicted Functional Partners:
hlyA_1
Hemolysin, chromosomal.
 
   0.941
prsE_1
Type I secretion system membrane fusion protein PrsE.
 
  
 0.915
glnQ_2
Glutamine transport ATP-binding protein GlnQ.
 
     
0.898
pstB
Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.871
prsE_2
Type I secretion system membrane fusion protein PrsE.
  
 0.821
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
 
     
0.773
prsE_3
Type I secretion system membrane fusion protein PrsE.
  
 0.753
cya_2
Cyclolysin.
 
   0.721
cya_7
Cyclolysin.
 
   0.709
cya_6
Cyclolysin.
 
   0.666
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.