Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH50613.1 | hlyA_1 | SHM7688_00040 | SHM7688_00037 | Hypothetical protein. | Hemolysin, chromosomal. | 0.619 |
CUH50613.1 | prsD_1 | SHM7688_00040 | SHM7688_00038 | Hypothetical protein. | Type I secretion system ATP-binding protein PrsD. | 0.623 |
CUH50613.1 | prsE_1 | SHM7688_00040 | SHM7688_00039 | Hypothetical protein. | Type I secretion system membrane fusion protein PrsE. | 0.757 |
CUH53427.1 | apxIB | SHM7688_02881 | SHM7688_02880 | Type I secretion outer membrane protein, TolC family. | RTX-I toxin determinant B. | 0.982 |
CUH53427.1 | prsE_1 | SHM7688_02881 | SHM7688_00039 | Type I secretion outer membrane protein, TolC family. | Type I secretion system membrane fusion protein PrsE. | 0.742 |
apxIB | CUH53427.1 | SHM7688_02880 | SHM7688_02881 | RTX-I toxin determinant B. | Type I secretion outer membrane protein, TolC family. | 0.982 |
apxIB | bepC | SHM7688_02880 | SHM7688_03515 | RTX-I toxin determinant B. | Outer membrane efflux protein BepC precursor. | 0.882 |
apxIB | cya_3 | SHM7688_02880 | SHM7688_00967 | RTX-I toxin determinant B. | Cyclolysin. | 0.562 |
apxIB | cya_4 | SHM7688_02880 | SHM7688_00968 | RTX-I toxin determinant B. | Cyclolysin. | 0.545 |
apxIB | hlyA_1 | SHM7688_02880 | SHM7688_00037 | RTX-I toxin determinant B. | Hemolysin, chromosomal. | 0.539 |
apxIB | hlyA_4 | SHM7688_02880 | SHM7688_03396 | RTX-I toxin determinant B. | Hemolysin, chromosomal. | 0.516 |
apxIB | prsE_1 | SHM7688_02880 | SHM7688_00039 | RTX-I toxin determinant B. | Type I secretion system membrane fusion protein PrsE. | 0.763 |
bepC | apxIB | SHM7688_03515 | SHM7688_02880 | Outer membrane efflux protein BepC precursor. | RTX-I toxin determinant B. | 0.882 |
bepC | prsE_1 | SHM7688_03515 | SHM7688_00039 | Outer membrane efflux protein BepC precursor. | Type I secretion system membrane fusion protein PrsE. | 0.700 |
cya_3 | apxIB | SHM7688_00967 | SHM7688_02880 | Cyclolysin. | RTX-I toxin determinant B. | 0.562 |
cya_3 | cya_4 | SHM7688_00967 | SHM7688_00968 | Cyclolysin. | Cyclolysin. | 0.466 |
cya_3 | prsD_1 | SHM7688_00967 | SHM7688_00038 | Cyclolysin. | Type I secretion system ATP-binding protein PrsD. | 0.659 |
cya_3 | prsD_2 | SHM7688_00967 | SHM7688_00452 | Cyclolysin. | Type I secretion system ATP-binding protein PrsD. | 0.653 |
cya_3 | prsE_1 | SHM7688_00967 | SHM7688_00039 | Cyclolysin. | Type I secretion system membrane fusion protein PrsE. | 0.704 |
cya_4 | apxIB | SHM7688_00968 | SHM7688_02880 | Cyclolysin. | RTX-I toxin determinant B. | 0.545 |
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