STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH50709.13-ketoacyl-(acyl-carrier-protein) reductase. (80 aa)    
Predicted Functional Partners:
CUH50710.1
Ureidoglycolate lyase.
 
  0.872
cprA
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
  
 0.750
dhbF
Dimodular nonribosomal peptide synthase.
  
 0.725
cmdD
Chondramide synthase cmdD.
  
 0.724
gltA_1
Glutamate synthase [NADPH] large chain.
     
 0.706
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.706
yheH
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheH.
   
 0.684
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
  0.661
fabB
3-oxoacyl-[acyl-carrier-protein] synthase 1; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.610
hmp_1
3-ketosteroid-9-alpha-hydroxylase reductase subunit.
   
 0.591
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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