STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH50725.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
  0.983
ydcV_1
Inner membrane ABC transporter permease protein YdcV.
 
 
 0.976
potH_2
Putrescine transport system permease protein PotH.
 
 
 0.973
ydcV_3
Inner membrane ABC transporter permease protein YdcV.
  
 
  0.916
murI_1
Glutamate racemase.
 
     0.878
ydfH
Putative HTH-type transcriptional regulator YdfH.
 
     0.852
ydcV_2
Inner membrane ABC transporter permease protein YdcV.
  
 
 0.821
ydcV_4
Inner membrane ABC transporter permease protein YdcV.
  
 
 0.821
potH_3
Putrescine transport system permease protein PotH.
  
 
 0.799
potB_1
Spermidine/putrescine transport system permease protein PotB.
  
 
 0.799
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.