STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiLThiamine-monophosphate kinase. (328 aa)    
Predicted Functional Partners:
CUH50801.1
Hypothetical protein; Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family.
     0.983
CUH50802.1
Radical SAM protein, family.
 
     0.957
nitA
Aliphatic nitrilase.
 
   
 0.957
CUH50799.1
Family protein.
 
     0.956
czcO_1
Putative oxidoreductase CzcO.
 
     0.947
CUH50804.1
Family protein.
 
   
 0.902
CUH50797.1
Putative biosynthetic protein, family.
       0.784
ydcR
Putative HTH-type transcriptional regulator YdcR.
 
     0.774
cobL
Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].
  
    0.467
czcO_2
Putative oxidoreductase CzcO.
 
     0.428
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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