STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH50802.1Radical SAM protein, family. (366 aa)    
Predicted Functional Partners:
CUH50801.1
Hypothetical protein; Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family.
 
   
 0.962
thiL
Thiamine-monophosphate kinase.
 
     0.957
CUH50799.1
Family protein.
 
     0.956
nitA
Aliphatic nitrilase.
 
     0.956
czcO_1
Putative oxidoreductase CzcO.
 
     0.947
CUH50804.1
Family protein.
 
   
 0.908
CUH50797.1
Putative biosynthetic protein, family.
       0.784
ydcR
Putative HTH-type transcriptional regulator YdcR.
 
     0.772
czcO_2
Putative oxidoreductase CzcO.
 
     0.493
gcvP
Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.452
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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