STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH50811.14-carboxymuconolactone decarboxylase. (132 aa)    
Predicted Functional Partners:
catD
3-oxoadipate enol-lactonase 2.
  
  
  0.846
gpr
L-glyceraldehyde 3-phosphate reductase.
       0.782
sotB
Sugar efflux transporter B.
 
     0.770
CUH54087.1
3-carboxy-cis,cis-muconate cycloisomerase.
  
 
 0.716
ampR
HTH-type transcriptional activator AmpR; Belongs to the LysR transcriptional regulatory family.
 
     0.631
Hgd
2-(hydroxymethyl)glutarate dehydrogenase.
  
 
  0.477
mmsB_1
3-hydroxyisobutyrate dehydrogenase.
  
 
  0.477
mmsB_2
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
 
  0.477
garR
2-hydroxy-3-oxopropionate reductase.
  
 
  0.477
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.467
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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