STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase. (313 aa)    
Predicted Functional Partners:
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
 
 0.998
tsaA
Putative peroxiredoxin.
  
 
 0.973
trxA_1
Thioredoxin-M.
  
 0.959
trxC
Thioredoxin-2.
  
 0.951
CUH54177.1
Hypothetical protein.
  
 0.935
CUH51352.1
Hypothetical protein.
  
 0.928
selD
Selenide, water dikinase.
    
 0.927
gltA_1
Glutamate synthase [NADPH] large chain.
    
 0.907
gltB
Glutamate synthase [NADPH] large chain precursor.
    
 0.907
cprA
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
   
 
 0.878
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.