STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH50859.1Hypothetical protein; TonB family C-terminal domain. (281 aa)    
Predicted Functional Partners:
CUH50861.1
Protein TolR.
 
 
 0.996
CUH50860.1
Protein TolR.
 
 
 0.992
CUH50862.1
Colicin uptake protein TolQ.
 
 
 0.992
CUH52995.1
TonB-dependent Receptor Plug Domain protein.
  
 
 0.953
exbD
Biopolymer transport protein ExbD.
  
 
 0.931
CUH53307.1
Hypothetical protein.
    
   0.903
cirA
Colicin I receptor precursor.
  
 
 0.898
exbB
Biopolymer transport protein ExbB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.876
viuB_1
Vibriobactin utilization protein ViuB.
 
    0.861
fhuA
Ferric hydroxamate uptake.
 
 
 0.857
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.