CUH50879.1 protein (Shimia marina) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Score

CUH50879.1

Hypothetical protein. (77 aa)

Predicted Functional Partners:

algD

GDP-mannose 6-dehydrogenase.

0.564

cya_2

Cyclolysin.

0.461

Your Current Organism:

Shimia marina

NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03

Basic Settings

Network type:

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meaning of network edges:

evidence

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( line thickness indicates the strength of data support )

active interaction sources:

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUH50879.1	algD	SHM7688_00310	SHM7688_00311	Hypothetical protein.	GDP-mannose 6-dehydrogenase.	0.564
CUH50879.1	cya_2	SHM7688_00310	SHM7688_00312	Hypothetical protein.	Cyclolysin.	0.461
algD	CUH50879.1	SHM7688_00311	SHM7688_00310	GDP-mannose 6-dehydrogenase.	Hypothetical protein.	0.564
algD	cya_2	SHM7688_00311	SHM7688_00312	GDP-mannose 6-dehydrogenase.	Cyclolysin.	0.762
cya_2	CUH50879.1	SHM7688_00312	SHM7688_00310	Cyclolysin.	Hypothetical protein.	0.461
cya_2	algD	SHM7688_00312	SHM7688_00311	Cyclolysin.	GDP-mannose 6-dehydrogenase.	0.762

[ The below analysis is limited to the network nodes included in the specified statistical background ]

Network Stats

number of nodes:

number of edges:

average node degree:

2.4

avg. local clustering coefficient:

0.867

expected number of edges:

PPI enrichment p-value:

0.234

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:18132

Jlp2/Ccd25, and Detection of mechanical stimulus

3 of 5

3.4

4.86

5.34e-07

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5620916

VxPx cargo-targeting to cilium

2 of 24

2.55

1.43

0.0131

MAP-5620920

Cargo trafficking to the periciliary membrane

2 of 32

2.42

1.42

0.0131

MAP-5617833

Cilium Assembly

2 of 81

2.02

0.98

0.0455

MAP-1852241

Organelle biogenesis and maintenance

2 of 91

1.97

0.97

0.0455

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR039730

Jlp2/Ccd25

2 of 2

3.62

2.37

0.00092

IPR008532

NFACT, RNA-binding domain

2 of 3

3.45

2.37

0.00092

Enrichment display settings

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