STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_1Alkaline phosphatase synthesis sensor protein PhoR. (564 aa)    
Predicted Functional Partners:
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.997
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ.
0.991
creB
Transcriptional regulatory protein CreB.
 0.976
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.975
arcB_4
Aerobic respiration control sensor protein ArcB.
 
0.972
arcB_2
Aerobic respiration control sensor protein ArcB.
0.905
baeR
Transcriptional regulatory protein BaeR.
 
 0.902
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 0.883
yycF
Transcriptional regulatory protein YycF.
 0.867
tcrA
Transcriptional regulatory protein TcrA.
 
 0.867
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.