STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH51154.1GSCFA family protein. (353 aa)    
Predicted Functional Partners:
CUH51153.1
Hypothetical protein.
       0.776
CUH51156.1
Site-specific recombinase XerD.
  
    0.644
CUH51155.1
Hypothetical protein.
       0.642
CUH53504.1
Hypothetical protein.
   
 0.613
CUH53509.1
Hypothetical protein.
   
 0.613
CUH53456.1
Phage gp6-like head-tail connector protein.
  
  0.520
CUH51114.1
Hypothetical protein.
  
 
  0.483
CUH52688.1
Hypothetical protein.
  
 
  0.453
CUH53037.1
Hypothetical protein.
  
 
  0.441
CUH52499.1
Cellulose synthase subunit BcsC.
       0.407
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.