STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH51535.1Putative multidrug export ATP-binding/permease protein. (613 aa)    
Predicted Functional Partners:
cydD
ATP-binding/permease protein CydD.
   
 
0.918
apxIB
RTX-I toxin determinant B.
   
 
0.917
pstB
Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.900
CUH51973.1
Putative multidrug export ATP-binding/permease protein.
  
 
0.778
rlmD
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.764
cmdD
Chondramide synthase cmdD.
  
 0.762
prsD_3
Type I secretion system ATP-binding protein PrsD.
  
 0.681
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
     
0.654
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
   
 
0.613
kpsT_1
Polysialic acid transport ATP-binding protein KpsT.
   
  0.613
Your Current Organism:
Shimia marina
NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03
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