CUH51573.1 protein (Shimia marina) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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[Homology]

Score

CUH51573.1

Polysaccharide export protein Wza. (367 aa)

Predicted Functional Partners:

CUH51504.1

0.902

CUH51125.1

0.894

CUH52131.1

0.890

kpsM_1

0.888

kpsM_2

0.862

kpsT_3

0.826

CUH53251.1

0.825

CUH52132.1

0.821

kpsT_2

0.797

CUH54345.1

0.794

Your Current Organism:

Shimia marina

NCBI taxonomy Id: 321267
Other names: CECT 7688, DSM 26895, JCM 13038, KCCM 42117, Rhodobacteraceae bacterium CL-TA03, S. marina, Shimia marina Choi and Cho 2006, strain CL-TA03

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUH51125.1	CUH51573.1	SHM7688_00558	SHM7688_01010	Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.	Polysaccharide export protein Wza.	0.894
CUH51504.1	CUH51573.1	SHM7688_00941	SHM7688_01010	Vi polysaccharide export inner membrane protein VexD.	Polysaccharide export protein Wza.	0.902
CUH51504.1	CUH52132.1	SHM7688_00941	SHM7688_01572	Vi polysaccharide export inner membrane protein VexD.	Capsule polysaccharide biosynthesis protein.	0.916
CUH51504.1	CUH53251.1	SHM7688_00941	SHM7688_02704	Vi polysaccharide export inner membrane protein VexD.	Capsule polysaccharide biosynthesis protein.	0.913
CUH51504.1	CUH54345.1	SHM7688_00941	SHM7688_03815	Vi polysaccharide export inner membrane protein VexD.	Vi polysaccharide export inner membrane protein VexD.	0.746
CUH51504.1	kpsM_1	SHM7688_00941	SHM7688_00940	Vi polysaccharide export inner membrane protein VexD.	Polysialic acid transport protein KpsM.	0.986
CUH51504.1	kpsM_2	SHM7688_00941	SHM7688_01570	Vi polysaccharide export inner membrane protein VexD.	Polysialic acid transport protein KpsM.	0.970
CUH51504.1	kpsT_2	SHM7688_00941	SHM7688_01569	Vi polysaccharide export inner membrane protein VexD.	Polysialic acid transport ATP-binding protein KpsT.	0.970
CUH51504.1	kpsT_3	SHM7688_00941	SHM7688_03816	Vi polysaccharide export inner membrane protein VexD.	Polysialic acid transport ATP-binding protein KpsT.	0.970
CUH51573.1	CUH51125.1	SHM7688_01010	SHM7688_00558	Polysaccharide export protein Wza.	Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.	0.894
CUH51573.1	CUH51504.1	SHM7688_01010	SHM7688_00941	Polysaccharide export protein Wza.	Vi polysaccharide export inner membrane protein VexD.	0.902
CUH51573.1	CUH52131.1	SHM7688_01010	SHM7688_01571	Polysaccharide export protein Wza.	Vi polysaccharide export inner membrane protein VexD.	0.890
CUH51573.1	CUH52132.1	SHM7688_01010	SHM7688_01572	Polysaccharide export protein Wza.	Capsule polysaccharide biosynthesis protein.	0.821
CUH51573.1	CUH53251.1	SHM7688_01010	SHM7688_02704	Polysaccharide export protein Wza.	Capsule polysaccharide biosynthesis protein.	0.825
CUH51573.1	CUH54345.1	SHM7688_01010	SHM7688_03815	Polysaccharide export protein Wza.	Vi polysaccharide export inner membrane protein VexD.	0.794
CUH51573.1	kpsM_1	SHM7688_01010	SHM7688_00940	Polysaccharide export protein Wza.	Polysialic acid transport protein KpsM.	0.888
CUH51573.1	kpsM_2	SHM7688_01010	SHM7688_01570	Polysaccharide export protein Wza.	Polysialic acid transport protein KpsM.	0.862
CUH51573.1	kpsT_2	SHM7688_01010	SHM7688_01569	Polysaccharide export protein Wza.	Polysialic acid transport ATP-binding protein KpsT.	0.797
CUH51573.1	kpsT_3	SHM7688_01010	SHM7688_03816	Polysaccharide export protein Wza.	Polysialic acid transport ATP-binding protein KpsT.	0.826
CUH52131.1	CUH51573.1	SHM7688_01571	SHM7688_01010	Vi polysaccharide export inner membrane protein VexD.	Polysaccharide export protein Wza.	0.890

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Network Stats

number of nodes:

4

number of edges:

4

average node degree:

2

avg. local clustering coefficient:

0.833

expected number of edges:

3

PPI enrichment p-value:

0.361

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046416

D-amino acid metabolic process

4 of 7

1.99

1.81

0.00023

GO:0046436

D-alanine metabolic process

3 of 4

2.1

1.43

0.0018

GO:1901606

Alpha-amino acid catabolic process

3 of 11

1.66

1.03

0.0074

GO:0009063

Cellular amino acid catabolic process

3 of 14

1.56

0.94

0.0102

GO:1901605

Alpha-amino acid metabolic process

6 of 87

1.07

0.87

0.0018

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1497

D-amino acid metabolic process, and Cation/H+ exchanger

4 of 7

1.99

2.11

4.57e-05

CL:1452

Mixed, incl. Oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor, and Pilus assembly

6 of 31

1.52

1.89

7.36e-06

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

spiu00360

Phenylalanine metabolism

5 of 7

2.08

3.19

1.75e-07

spiu00473

D-Alanine metabolism

3 of 3

2.23

2.0

0.00014

spiu00401

Novobiocin biosynthesis

2 of 3

2.05

1.17

0.0058

spiu00330

Arginine and proline metabolism

3 of 15

1.53

1.1

0.0036

spiu01502

Vancomycin resistance

2 of 5

1.83

1.02

0.0100

(more ...)

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